+1 for fragmentLength next to fragmentName

On 24 May 2014, at 14:04, David Glazer <notifications@github.com> wrote:

> In src/main/resources/avro/reads.avdl:
> 
> > +    // fragment attributes
> > +
> > +    // The fragment name. Equivalent to QNAME (query template name) in SAM.
> > +    string fragmentName;
> > +
> > +    // The orientation and the distance between reads from the fragment are
> > +    // consistent with the sequencing protocol (extension to SAM flag 0x2)
> > +    union { null, boolean } properPlacement = false;
> > +
> > +    // The fragment is a PCR or optical duplicate (SAM flag 0x400)
> > +    union { null, boolean } duplicateFragment = false;
> > +
> > +    // The number of reads in the fragment (extension to SAM flag 0x1)
> > +    union { null, int } numberReads = null;
> > +
> > +    union { null, int } templateLength = null; // equivalent to TLEN in SAM
> suggestion: call this fragmentLength, and put it next to fragmentName
> 
> —
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> 




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