[FIX] renamed test files
[FIX] compare decompressed raw bam files
[FIX] renamed sak test file
[FIX] fixed tree_recon
[FIX] fixed flex bar tests
[FIX] renamed test files
[FIX] renamed test files
[FIX] deleted some file extensions
[FIX] fixed adaption of std::string to use pointers and assume contiguous storage
[FIX] fixed test according to changes in std::string adaption
[FIX] removed mason
[FIX] moved jumpToRegion/Orphans to bam_index_bai.h completely
[FIX] fixed test_index_crosscompare_dna
Merge pull request #47 from weese/feature/stream/core-fixes

[FIX] deleted mason, fixed couple of already converted app tests