First try at bootstrap 3.0
Explicitly set render_html before knitting
Bootstrap 3 migration

Fixes #15, #17, #18, #19
Update examples, add messages example
Move messages to examples because it fails CRAN checks
Remove unused wrap.pl
Update documentation with show_output and show_figure
Add media-body to all sibling divs with a figure
Fixes for CRAN
Update documentation
Update makefile with some build commands
Update examples
Detect warning messages as well
Fix show_output to only hide the code blocks
Update vimrplugin command for new version
Indent h3-h5 in TOC
Make jQuery selector more general for rcode blocks

This properly styles asis code blocks to address #21
Use https for all links

Fixes #16
Make capitalization and punctuation consistent in examples

Thanks Matt!
Wrap all output blocks from same chunk with media