Api v2

New names and organization for version 2 of the opentree api.

These changes depend on some recent db structural changes introduced by taxomachine (already merged to master) which will necessitate a db update for oti. I have pushed an updated database to devapi and re-indexed the studies there as well.

@jar398, @jimallman, would you review this?  
I think the easiest way is just to write a custom method to remove this
study and then run it. If I don't remember to do this, please remind me...

On Wed, Sep 10, 2014 at 10:49 PM, Jim Allman <notifications@github.com>
wrote:

> In TESTS.md:
>
> > @@ -0,0 +1,65 @@
> > +Currently, there are no automated test procedures for OTI. You can however, fairly thoroughly test the performance manually. Run the following command to index the current phylesystem repo on devapi.opentreeoflife.org:
> > +
> > +```bash
> > +./index_current_repo.py http://devapi.opentreeoflife.org/oti http://devapi.opentreeoflife.org/api
>
> In case it helps, the error message seems to be coming from *ot-base*
> <https://github.com/OpenTreeOfLife/ot-base/blob/9c0352af452518de3a3e1e17a96ad0bbd959934e/src/main/java/org/opentree/graphdb/DatabaseUtils.java#L115>
> .
>
> —
> Reply to this email directly or view it on GitHub
> <https://github.com/OpenTreeOfLife/oti/pull/26/files#r17402013>.
>