Refactoring fixtures

refs #2600, refs #2379

Refactoring fixtures to make permission management a little easier
- Separate fixtures into JSON file and split permissions fixtures from other fixtures
- make fixture migrations more robust by fetching objects, not relying on
  ids and checking before adding
- changed owner fixture slightly to remove any confusion between the 'Owner' role and 'Ghost Owner' user.
- moved 003 fixture versions out of config into logic, possibly not a good
  idea
- refactored permissions fixtures and added permissions_roles fixtures to
  make it easier to read / add
Merge pull request #3238 from ErisDS/issue-2600

Refactor fixtures & fixture migrations to 003