Make CLI module use MongoDB
Allow configuration during the initialization of a repository
Merge branch 'initial-configuration' into mongo-cli

Conflicts:
	src/cli/src/main/java/org/geogit/cli/CLIInjectorBuilder.java
Add MongoStorageModule to version control
Use preconfigured connection parameters if they are present
Resolve conflicts from upstream
Add MongoStorageModule
Add more flexibility in Mongo connection configuration
removed unused folder
Added loggin documentation
Add GeoJSON import command
Add GeoJSON export command
Add GeoJSON Import test
Add copyright header
Remove unused imports
Add GeoJSON Export test
Add manpages for GeoJSON commands
Update documentation
Improvements in OSM mappings

Support for adding default fields in MappingRule.java
Better handling of lies/plygons and extra options

This commit addresses #513 and #514

Documentation has been updated and the OSM chapter cleaned, removing a section that shouldn't be in the manual
fixed issues with default field names