Major changes to ESAT and calculation of local lambda based p-values now
possible due to BasicScnaStatisticScore.

Uses EndInWindowCountScore or StartInWindowCountScore accordingly.
Adding .DS_Store
Merging conflicts
No changes made. Committing to please github
No changes made. Resolving index issues
Merging conflicts
Merging
Adding temporarily
Removed .DS_Store
Merging
Merge branch 'master' of https://github.com/mgarber/scriptureV2.git
Helper functions added to AlignmentModel and CountScore