Merge pull request #1 from dmcglinn/master

Add manuscript file
markdown edits to Introduction
markdown edits
markdown edits
markdown edits
markdown edits
markdown edits
Merge pull request #2 from brymz/master

Edit for Markdown Format
First attempt at P1 of introduction and organize P2 and P3.
Merge pull request #3 from brymz/master

First attempt at P1 of introduction and organize P2 and P3.