Added PROMPT_COMMAND for xterm title pwd display
Now uses 'Global|Validate*' check functions. Updated a lot of the tests to use bash double bracket tests. Localised some more variables. Updated DumpSeq mem usage.
Now uses disconnect_if_idle instead of dinsconnect_when_inactive. This should now auto-reconnect
rollback_ResultSet now only revoked imported states, was also revoking ALIGNED state
pre_process_IDR now expects txt file suffixes from SWEmbl output
Now removes output if it exists already
Made some vendor handling tweaks. cache_slice now has debug output
removed NHDF-AD gender hack
Changed format support from bed to txt
Removed some hacky comments.
Enabled garbage collection.
get_alignment_path_prefix_by_ResultSeet now handles controls properly. Removed hacky NHDF comments
removed analysis_description data patch