made small changes
Cleaning and adding the actual time dynamics functionality back into the program.
drastically hacked away unnecessary functions: removed all gaussian functions except ngauss; removed all reference to the library threestate.py; cut out some other unnecessary functions.
The program now makes the time-time correlation plots and saves them in the same folder. It does not yet save the data from these plots in the .dat file, though.
insignificant changes
insignificant changes
merged from Bruno
insignificant commit
mofified peak acceptance factor
mofified peak acceptance factor