Initial commit
Altered the readme / project description.
Updated the license file.
Added the base files and routines to populate the original images folder.
Added a description to the original image file folder.
Altered the description of the original image file folder.
Added a step rigidly registering all sequences to the T2 image.
Added the new t2skullstripped step, which produced skull-stripped versions of the T2-space images.
Added the intensity in-homogenity removal / bias field correction step and some documentation documents describing on-the-side experiments and the performance of a number of tools.
Added the expert segmentations and a script to transform them (roughly) to T2 space.
Added the intensity standardization step.
Test
Added and executed the T2Space lesion segmentation.
Preparing for registration to stdspace.
Registration and warping to STD space and minor changes to other files.
Added a header precision correction step to the script.
Updates registration to std space, but apparently still some bugs.
Updated registration to std space some more.
Added rudimentary evaluation of the registration to std space to detect outliers.
Added rudimentary evaluation of the registration to T2 space to detect outliers.