Fixed bug with dead-end pore clusters.


Former-commit-id: eb5cdda23a00ae3ea936507522cbeff4474df2e4
Former-commit-id: e198895350d018e136835ac758ad9bd74fc58b44
Switched list to dict for object-on-object storage


Former-commit-id: 50286d8a8f96c12a2180ea3df7ff7df230153c80
Former-commit-id: 84f595abf00b52fe10d58ac5802064a5c9a506c6
Fixed bug in - _add_xtra_throat_data


Former-commit-id: c1417acd6aa6eed175dc455f38a72875fac7ac40
Former-commit-id: cba1ad3f96efeec3328573c55cfc541d838740f4
Added some check_health methods to Tools
Removed check_basic and print_overview from GenericNetwork


Former-commit-id: e24402c5c009ca7e3f7c04d7193c61037bc9307e
Former-commit-id: 8f8d143e75143e6079d63db553f43bfd1e44bc76
Added lightweight setup file to allow installation with pip (to allow python to widely access OpenPNM, just go to the dir and do Exception:
Traceback (most recent call last):
  File "/usr/lib/python2.7/dist-packages/pip/basecommand.py", line 126, in main
    self.run(options, args)
  File "/usr/lib/python2.7/dist-packages/pip/commands/install.py", line 195, in run
    InstallRequirement.from_line(name, None))
  File "/usr/lib/python2.7/dist-packages/pip/req.py", line 98, in from_line
    return cls(req, comes_from, url=url)
  File "/usr/lib/python2.7/dist-packages/pip/req.py", line 38, in __init__
    req = pkg_resources.Requirement.parse(req)
  File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 2582, in parse
    reqs = list(parse_requirements(s))
  File "/usr/lib/python2.7/dist-packages/pkg_resources.py", line 2495, in parse_requirements
    raise ValueError("Missing distribution spec", line)
ValueError: ('Missing distribution spec', '[--user]')

Storing complete log in /home/harday/.pip/pip.log.


Former-commit-id: a9a7843e1d1b3722fac62ae795135f3ccf51c8ab
Former-commit-id: 93730f2e4ec43ec5d8eb9d286e44bc1ce35c7d35
New pip installation script


Former-commit-id: f2fd7a94192bedb99e99b53a6bfee27b4a9bea82
Former-commit-id: 6dfb41cfc02159bef6cfce45c7cc8d4b53b0eaa7
Newline


Former-commit-id: 15fcd8057b9d15a93023c88a80b79e5adb949499
Former-commit-id: 77d1fb1b159ea2146fe60f60d3ae66ad3b226103
Cleaned up the object linking a bit more


Former-commit-id: 544569b234fdef5891ccaeccc71393ebef92aa9d
Former-commit-id: 16c492d38bd11ca0ec4cf0aa679f643c9bd67fe9
fixed a bug in __Import__._add_geometry that regenerates any imported values into the network after import


Former-commit-id: ef80003181842273abea79c5fca3acc7348446fa
Former-commit-id: 6b093b46c6b6c980a0bab19991d5b5ff8d76a26d
More cleanup of the object linking
- link dictionaries are no longer in Tools, but are created as needed by each subclass of Base


Former-commit-id: 7226a8c1f21b1d9433701b162f0fea015b54061f
Former-commit-id: d22e34124362d01b0c7e8f845f6c9ebc9c1707a1
Merge branch 'develop' of https://github.com/PMEAL/OpenPNM into develop


Former-commit-id: 4715552048945b3d6e9cb0e565662125cb5e79fc
Former-commit-id: e7327b43e0d9f07291ae9510aa797c509390ae12
Added GDL specific subclasses for SGL10 and Toray090.  There are not perfect, but include some attempt to match the 2007 Gostick et al paper.


Former-commit-id: b24a6adb01a3a8275c4d4e99a4745e1671ba3886
Former-commit-id: 9fa80f11ceed6d8331bc6200fd56629ff0cc3fb0
Updated 'check_consistency' to work with new dictionary based object linkages.


Former-commit-id: 9739d608f175c6d83cf6593c95bc9d3e4fa47487
Former-commit-id: 3064331279243fb171a6495490f4b1feed27930d
Lightweight function to allow VTK previews without loading Paraview. Python2 only


Former-commit-id: c419920be209a4046659cd5569c48694d3fd38e9
Former-commit-id: 7c0b01336f23847ff7f9a693b4c85c68c4c35951
Implemented a from-template network generator.


Former-commit-id: b4da4059429bee328ce0c0c66cd3f4475c633255
Former-commit-id: 15703cfff7407f871459ef01591d40fa20351bfc
Corresponding tests and lightweight documentation written


Former-commit-id: 9db77aff509f380ceaca5775ab402d722544f942
Former-commit-id: a469d50e85b5d816083749a6637d1fe000e85ea9
Fixed issue with loading arrays of incompatible shape.


Former-commit-id: 8478dd9c45d47a4f70637fc72ab7451733243f4e
Former-commit-id: fd3df6f28f553341792723dcb07b327042f49684
Updated the throat_vector function to actually work


Former-commit-id: 51b419271facc2f40ec3230b2042cf1b6fff8789
Former-commit-id: db700767430b341ca1699c8a2361f471f6bc24a4
Changed stick_and_ball to be very generic.  Pore sizes are not between 0 and 1.


Former-commit-id: a32fa65a9752d568fcb5ef0d80328d65a5c706ff
Former-commit-id: b264bef48456d3a3c4a1c3dd11fc27169d5e927b
Changed log levels to 20


Former-commit-id: f3e2b601665bfaf6982400249665a00d0e208c20
Former-commit-id: e6efc290183f9a1338345fd22fecda5f82ee9447