Edited MyExcelEditor.java so that it rearanges the columns of the tsv file
new launch4j/coverageQc.xml
new exe made
changed working in xsl to Dr. Zhang's specifications. Per Dr. Zhang "When there is no mutation found, use the sentence: “No clinically significant variants detected by next-generation sequencing”. Instead of “No variants detected by next-generation sequencing” because we are not reporting synonymous mutations and know SNPs."
updated with lin's wording for no variants
rearranged the columns in the excel sheet so that the protein position and cDNA positive is next to the coordinate (so it is easier to see if area is an important mutation spot)
changed consequence check from .equals "synonomous varient" to .contains, but because sometimes there is more than one consequence but if it contains synomomous then it shouldn't be called