Adjust configure.ac to be compatible with automake 1.14

Also add two new .gitignore entries
Fix some Makefile issues.
Make TORQUE compile with the newer versions of automake.
Fix some compilation problems on older gcc versions.
Fix one more compiler error with the updates for automake 1.14
TRQ-2775. Add the qstat option -C for condensed output.

Moab often polls TORQUE about jobs that haven't changed for long periods
of time and winds up with repetitive, useless information. Moab can now
request the condensed output, and TORQUE will provide only the job
name, resources used, queue, state, and job owner for jobs that haven't
changed recently. Jobs that have recently changed will send a full
output. Changed recently means in the last 45 seconds, but the server
parameter job_full_report_time can be set to change this default.
Add a comment
TRQ-2775. Make the -C option work without -t as well as with -t
Fix a few more problems with automake 1.14 and the changes made for it.

1. The dis_read.c file wasn't copied over to the mom and needed to be.
2. CXXFLAGS never got set with -g if --with-debug was configured,
  meaning debug symbols didn't load.
3. There were two FUNCTION_TIMER statements in node_manager.c, making it
so that the server didn't compile with CAN_TIME defined.
TRQ-2776. Make get_proc_stat() use tokenized parsing instead of sscanf.

This is about 25% faster than using the sscanf method of reading the
file.
TRQ-2776. Make some of the calls strtoll instead of strtol.

Some of the time fields are potentially longer than a long.
Update the fix version to 5.1.0
Refactor the function run_pelog().

run_pelog() was just under 1000 lines long, and now its been brought
down to less than 300 lines. It can still be fixed up a bit, but this is
a good first step of improvements.
Undo the changes made to make TORQUE compatible with automake 1.14.1

There are a lot more changes required for full compatibility so I'm backing out the temporary changes for now as they make it so the unit tests can't be build. Until full compatibility can be reached I'm going to defer these changes.
Test file to see if jenkins polling is working
Revert "Test file to see if jenkins polling is working"

This reverts commit 9eff73c585b452b116852bc13b59299ea1b316f9.
Merge branch 'feature/ascent' into master (run by Sean Moe)
Merge branch 'master' into feature/iris (run by Vance Baarda)