Made more general (any kind of file, not just fq)
not sure how else to commit that I deleted (actually, moved) a file
Fixed a couple small bugs
Created file to sort column file by sum
changed to sorting with highest first (I think)
Wrote this quick script to make a histogram showing how many genes have each
particular frequency.
Quick script to make frequency chart for genes
fixed bug (hadn't gotten syntax right for getopt)
weeding out the entries which don't fit any gene symbols
forgot to encorporate fact that name is of form id.1-2-2 or whatever. Fixed that.
another little detail
Modified so results will be sorted by frequency
more small syntax bugs
wrote script to pull out sam entries matching IDs for a particular
boundary crossing
Added functionality to deal with multiple of each type of SAM file
hadn't been really doing things right... this will hopefully fix things, or at least give me
some idea what's going on.
Merge branch 'develop' into investigate_found

Conflicts:
	randSubset.pl
working on modifying runAll to work on the public data
little script to make the IDs text file
cleaned up log messages & looping