Added lots of examples to the manual, plus some other fixes.
Added manual link to Readme.md
Merge pull request #9 from kyleabeauchamp/patch-2

Added manual link to Readme.md
Changes to work on Python 3
more stuff
make it possible to kill with control c
forgot one file
Change manual for install instructions
Add checks for dependencies
newline
Make createSoftForceField python3 compatible
Merge pull request #13 from rmcgibbo/package

Package up PDBFixer
Change the base url of the project
Merge pull request #15 from rmcgibbo/urlchange

Change the base url of the project
Added draft .travis.yml
Updated README with travis-ci badge.
Fixed path for OpenMM conda package.
Fixed PATH after conda install.
Added setuptools to travis-ci test.
Another attempt at travis-ci fix.