Fixed bug. improved speed when creating graph
fix intr bug
removed recursive function "UpdateInfo". Now, large scaffolds can be created without maxrecursiondepth
error...
removed print statement
removed one call of connected_components
removed copying the graph in connected_components_subgraph. Apparently default...
removed att connected_components where a deep copy is performed. This reduces both
memory and time.
Changed version number
changed directoru of bam_parser
fixed bug when importing bam_parser
Removed "obs list" for each edge after calculating score. Removed adding the obs list
for all edges i G_prime since they are not used. Also removed calculating score for all G_prime edges.
fixed introduced bug. in CreateEdge. Changed data type on specified mean and stddev for floats.
added heapy log of memory.
exit just before creating graph
some time stamps introduced
new way of parsing out libmetrics. Fetching form bam_file is expensive.
removed unused defaultdict attributes for scaffold objects. They were introduced
when calculating expected number of links.
Added some more heap memory allocation stamps.
removed sys.exit after creating graph
Added mutual exclusive option error hadling for --no_score and -y.
Removed initialization of G when --no_score is specified.
Removed statistical testing when --no_score is specified.
added newliwe to stderr output