fixed formatting bug for predictedmotif.txt files
Merge branch 'master' of https://github.com/JBetz/466-Bioinformatics
Merge branch 'master' of https://github.com/JBetz/466-Bioinformatics
bug fixes and sampling biases
Merge branch 'master' of https://github.com/JBetz/466-Bioinformatics
removed sort function and change iteration count
tweaking parameters to minimize entropy output
added information content scoring and additional console output
added information content scoring and additional console output
added information content scoring and console output
removed debugging parameters
fixed site overlap function and changed iteration parameter in motif finder
commented out old site overlap function and renamed new one
now computes average for each data set
iteration count is now inputed by the user via the first command line argument
updated comments