sphinx-api: Generate skeleton docs
ROI_utils.py: Remove nonexistent TextI import
sphinx-api: Don't generate PDF and fix install dir
OmeroPy: Don't include copyright boilerplate in docstrings
build: Remove support for Ice 3.3
Remove obsolete, broken and unused scripts
remove further Ice 3.3 from OMERO 5.1
Merge pull request #1 from mtbc/ice33-removal-rleigh

Remove further Ice 3.3 references from OMERO 5.1
Change VM ostype from Debian to Debian_64

Note the VM image is already 64 bit. The build was failing on octopus, for some inexplicable reason changing the ostype flag fixes the build.
Use numpy.float32 for PixelsType 'float'
Use numpy.float64 for 'double' pixelType
Merge pull request #2586 from manics/rebased/develop/vbox_fix

VirtualBox fix for octopus (rebased onto develop)
Merge pull request #2455 from rleigh-dundee/ice33-removal

Remove support for Ice 3.3
Merge pull request #2357 from rleigh-dundee/ant-apisupport

Generate Python API reference with Sphinx
Merge pull request #2590 from will-moore/rebased/develop/numpy_float32_issue-2547

Use numpy.float32 for PixelsType 'float' (rebased onto develop)
Update develop submodules

Repository: openmicroscopy/openmicroscopy
Already up-to-date.

Repository: openmicroscopy/bioformats
Updating f247b30..bfa3027
Merged PRs (fast-forward):
  # PR 1110 sbesson 'BF docs: Jenkins cleanup (rebased onto develop)'
  # PR 1147 rleigh-dundee 'cpp: bioformats: PixelProperties supports pixel types of different endianness'
  # PR 1152 hflynn 'Comstat2 link (rebased onto develop)'
  # PR 1149 sbesson 'Add prefix to zip file produced by dist-bftools target (rebased onto develop)'
  # PR 1106 melissalinkert 'Imaris HDF: make sure that all resolutions have the same ZCT sizes (rebased onto develop)'
  # PR 1097 melissalinkert 'CellSens: fix off-by-ones in subresolution tile calculations (rebased onto develop)'
  # PR 1070 melissalinkert 'DICOM: expand sequence reading to include known sequences (rebased onto develop)'
  # PR 1060 melissalinkert 'Allow dist-matlab to run on Windows'
  # PR 1049 melissalinkert 'DICOM: fix file grouping so that path names are normalized (rebased onto develop)'
  # PR 1028 melissalinkert 'Large fileset performance improvements (rebased onto develop)'
  # PR 1135 joshmoore 'Update native-lib-loader to 2.0.1 release (rebased onto develop)'
  # PR 1142 hflynn 'Add 'show and edit on Github' to docs side menu (rebased onto develop)'
  # PR 1137 melissalinkert 'Update version history for 5.0.2 (rebased onto develop)'
  # PR 1103 melissalinkert 'Flex: fix support for new file naming scheme (rebased onto develop)'
  # PR 1092 sbesson 'Allow for a >1 count increment in B&H .sdt Files. (rebased onto develop)'
  # PR 1101 melissalinkert 'QuickTime: fix header/footer parsing bug (rebased onto develop)'
  # PR 1127 sbesson 'CI logging improvements (rebased onto develop)'
  # PR 1102 melissalinkert 'Metamorph .nd performance improvements (rebased onto develop)'
  # PR 1109 melissalinkert 'Fix memo file path creation on Windows (rebased onto develop)'
  # PR 1100 melissalinkert 'Fix single plane ND2 line scan (rebased onto develop)'
  # PR 1096 melissalinkert 'Fix 5D Imspector support (rebased onto develop)'
  # PR 1098 melissalinkert 'Gatan metadata fixes (rebased onto develop)'
  # PR 1082 rleigh-dundee 'C++: Add support for integers of different endianness'
  # PR 1120 rleigh-dundee 'cpp: ome-bioformats: Use std::complex for complex pixel types'
  # PR 1118 joshmoore 'LogbackTools: silence ClassCastException traces (rebased onto develop)'
  # PR 1128 hflynn 'Update auto-generated documentation on develop'
  # PR 1119 hflynn 'User docs tidying (rebased onto develop)'
  # PR 1099 melissalinkert 'Disable file grouping in ImageJ remote import plugin (rebased onto develop)'
  # PR 1107 melissalinkert 'Exclude log4j and packages from target-test-runner (rebased onto develop)'
  # PR 1121 sbesson 'Fix bfGetPlane tile input check (rebased onto develop)'
  # PR 1117 rleigh-dundee 'cpp: Minor doxygen fixes'
  # PR 1126 hflynn 'Leica link (rebased onto develop)'
  # PR 1083 rleigh-dundee 'make: Convert variables to ant properties'
  # PR 1075 hflynn 'Remove dead bitmap link (rebased onto develop)'
  # PR 1076 hflynn 'Adding CONTRIBUTING file to BF repo (rebased onto develop)'
  # PR 1073 rleigh-dundee 'docs: Delegate all sphinx Makefile targets to ant'

Repository: ome/scripts
Updating 31f89c4..25a0869
Merged PRs (fast-forward):
  # PR 81 will-moore 'Make movie format time 12254 (rebased onto develop)'
  # PR 84 sbesson 'Get inputs all scripts (rebased onto develop)'
  # PR 79 sbesson 'Travis fix (rebased onto develop)'

Repository: openmicroscopy/ome-documentation
Updating be161c6..6e003c4
Merged PRs (fast-forward):
  # PR 817 ximenesuk 'Update DropBox documentation (rebased onto develop)'
  # PR 812 sbesson 'Remaining changes post 5.0.x job migration'
  # PR 816 will-moore 'Webgateway mip 5150 (rebased onto develop)'
  # PR 814 bpindelski 'Add LDAP error message explanation.'
  # PR 806 aleksandra-tarkowska 'Webstart template (rebased onto develop)'
  # PR 807 aleksandra-tarkowska 'ldap over ssl instruction improvement (rebased onto develop)'
  # PR 805 hflynn 'Adding contributing doc link & Zeiss link update'
  # PR 810 hflynn 'Adding example server setup page  (rebased onto develop)'
  # PR 743 sbesson 'Propose redesign of OMERO and Bio-Formats 5.0 CI jobs'
  # PR 809 sbesson 'Travis fix (rebased onto develop)'
  # PR 802 snoopycrimecop 'Update index.txt'
  # PR 801 sbesson 'Add Edit on Github button (rebased onto develop)'
  # PR 783 mtbc 'document new // separator in omero.fs.repo.path (rebased from dev_5_0)'
  # PR 782 will-moore 'Custom web login 11961 (rebased onto develop)'
  # PR 795 manics 'Root password reset command (rebased onto develop)'
  # PR 786 mtbc 'warn that in-place ln_s can be slower for HCS (rebased from dev_5_0)'
  # PR 797 ximenesuk 'Add DropBox Windows requirements'
  # PR 793 hflynn 'Ice35 support for Windows (rebased to develop)'
  # PR 791 hflynn 'Limitations update for 5.0.2 (rebased onto develop)'
  # PR 792 bpindelski 'Remove repetition of the word "files" (rebased onto develop)'
  # PR 787 manics 'Add code-signing documentation (rebased onto develop)'
  # PR 776 sbesson 'Remove all references to CI jobs in the official documentation'
  # PR 772 rleigh-dundee 'make: Convert variables to ant properties'
  # PR 771 hflynn 'Adding pyramid generation data duplication warning to in-place import (rebased onto develop)'
  # PR 760 rleigh-dundee 'Make Ice 3.4 the minimum supported version'
  # PR 768 hflynn 'Rephrasing CONTRIBUTING re: branch for PRs (rebased onto develop)'
  # PR 769 hflynn 'Making API doc links point at release version (rebased onto develop)'
  # PR 766 rleigh-dundee 'ant: Default all properties and handle empty vars in conf.py'
  # PR 758 hflynn 'Adding API doc links to OMERO docs front page (rebased onto develop)'
  # PR 759 hflynn 'ticket 10030 fix - contributing file for docs repo (rebased onto develop)'
  # PR 761 rleigh-dundee 'Delegate all Makefile targets to ant'

Generated by OMERO-5.1-latest-submods#120 (http://ci.openmicroscopy.org/job/OMERO-5.1-latest-submods/120/)