Original minia code
moved to src (at root)
Testing add colour to the graph
Debugged assigning to NULL(pointer?\!), paired kmer with colour (in binary representation)
Implemented most of the path/variabls required to match colour to contig, worknig on parsing SolidKmersColour again
Confirmed that save/restore colour work properly
IF run it without error/FP correction, some kmer can't match to colour
Extracted all the colour for simple_path
TODO: Working on calculate \'average\' colour for the consensus
Initial version of full colours contig.
Problems: some extensions can't find the kmer, (got something to do with false positive is Bloom). codede them with 8,9 for now.
How to represent left/kmer/right colour combination??
Implemented google c++ test framework.
Restructure and update makefile
Working summary, not that much detail yet.
3==========
Summary
No. of Colour:0  Count:2/37 Percentage:5.405%
No. of Colour:2  Count:9/37 Percentage:24.324%
No. of Colour:3  Count:28/37 Percentage:75.676%
Total length exclude (0):37
Number of swap:20
Number of swap exclude (0):16
Mean colour count per site:2.756757
Mean length per colour count:18.500000
==========
Draft summary diagram for visual only
Calculate various summary stat on colour count/pattern. Going to convert KmerColourUtil (static) to SummaryClass
Various summary reports/stats, need some sort of decision making process
Implement destructor for Traversalhtop
I am about to do/test something dangours, adding/modify initial commit
Merge branch 'master' of github.com:stevenhwu/clipper