add hooks to enable auto handing of merge conflicts

These hooks before and after the actual checkout process
will enable a pair of hook scripts to automatically handle
conflicts and potentially allow the checkout of repositories
over existing file sets
add sample hooks that allow cloning over extant files

Cloning a repo over an existing set of files would usually
cause a merge conflict that aborts the process and requires
manual intervention. This pair of hooks handles that case
by manually moving the extant objects out of the way,
completing the checktout, then restoring them to their
original places. The resulting state is a set of unstaged
local changes.
Merge pull request #89 from alerque/master

Add hooks to allow fancy merge handling