This is the VisualDEP Command-Line Version.
- src/visualdep.py:
  > All the prevous modules used to serve VisualDEP as a webpage were removed.
  > The BIOPYTHON -for PDB files manipulation- dependency was replaced for ProDy.
  > The all dependecy of external scripts (PExAtom.pl, compare_dx.pl, pqr2csv.c)
    it was removed and replaced for python implementations.
  > Using the `super' command from PyMOL to perform structural alignments.
- src/mvisualdep.py:
  > This is a new script that implements VisualDEP to perform multiple comparisons
    over several structures and construct a dendodrogram from the AND values from
    each comparision. (In very early stage)
- src/LICENSE:
  > GPLv2 License used. It may change in the future, it needs more discussion.
README file updated. Old folders removed.