Update 1-quality.txt
Merge pull request #25 from LSheneman/master

Updated to new amazon files, deleted old one, and fixed the link to a random blog again
Merge pull request #26 from LSheneman/master

took out course specific info
updated instructions/cite
fix typo at top
updated through assembly
updated to deal with canned data problems after partitioning
many updates
updated with various script changes, contributors
assembly instructions
more
changed @cswelcher author name to CS Welcher
added diffexpr to mrnaseq tutorial
finished draft diff expr
Corrected obsolete reference to strip-and-split-for-assembly.py

The script to split a paired-end file is now extract-paired-reads.py. The code snippet was correct, but the doc is incorrect.
Merge pull request #34 from humberto-ortiz/patch-1

Corrected obsolete reference to strip-and-split-for-assembly.py
minor updates
fixed mistakes in trimming /ht Sebastian Kopf
minor tweaks from having run through everything with a small example data set
added mapping and prokka instructions