Update dev_5_0 submodules

Repository: openmicroscopy/openmicroscopy
Already up-to-date.

Repository: openmicroscopy/bioformats
Updating c799e87..66d0fac
Merged PRs (fast-forward):
  # PR 1111 hflynn 'User docs tidying'
  # PR 1090 melissalinkert 'Add initial support for reading BinaryOnly OME-TIFF datasets'
  # PR 1104 ctrueden 'Update native-lib-loader to 2.0.1 release'
  # PR 1078 melissalinkert 'Lots of Zeiss CZI fixes'
  # PR 1095 melissalinkert 'Fix memo file path creation on Windows'
  # PR 1094 melissalinkert 'Imaris HDF: make sure that all resolutions have the same ZCT sizes'
  # PR 1093 sbesson 'BF docs: Jenkins cleanup'
  # PR 1080 melissalinkert 'Exclude log4j and packages from target-test-runner'
  # PR 1091 melissalinkert 'MRC: fix handling of mode 16 data'
  # PR 1018 melissalinkert 'Flex: fix support for new file naming scheme'
  # PR 1087 melissalinkert 'Metamorph .nd performance improvements'
  # PR 1081 melissalinkert 'Disable file grouping in ImageJ remote import plugin'
  # PR 1085 melissalinkert 'Fix single plane ND2 line scan'
  # PR 1086 melissalinkert 'QuickTime: fix header/footer parsing bug'
  # PR 1084 rleigh-dundee 'make: Convert variables to ant properties'
  # PR 1077 melissalinkert 'CellSens: fix off-by-ones in subresolution tile calculations'
  # PR 1079 melissalinkert 'Gatan metadata fixes'
  # PR 1061 melissalinkert 'Fix 5D Imspector support'
  # PR 1067 imunro 'Allow for a >1 count increment in B&H .sdt Files.'
  # PR 1072 hflynn 'Adding CONTRIBUTING file to BF repo'
  # PR 1074 rleigh-dundee 'docs: Delegate all sphinx Makefile targets to ant'
  # PR 1071 hflynn 'Remove dead bitmap link'

Repository: ome/scripts
Updating d1f6aae..dde2482
Merged PRs (fast-forward):
  # PR 83 sbesson 'Copyright bump'
  # PR 82 will-moore 'Get inputs all scripts'
  # PR 77 will-moore 'Make movie format time 12254'
  # PR 78 sbesson 'Travis fix'

Repository: openmicroscopy/ome-documentation
Updating 25ff911..c24c572
Merged PRs (fast-forward):
  # PR 778 mtbc 'document new // separator in omero.fs.repo.path'
  # PR 780 mtbc 'warn that in-place ln_s can be slower for HCS'
  # PR 777 sbesson 'Remove all references to CI jobs in the official documentation (rebased onto dev_5_0)'
  # PR 774 will-moore 'Custom web login 11961'
  # PR 775 rleigh-dundee 'build: Support JENKINS_JOB'
  # PR 773 rleigh-dundee 'make: Convert variables to ant properties'
  # PR 763 rleigh-dundee 'Deprecate Ice 3.3 and note its removal for 5.1'
  # PR 770 hflynn 'Adding pyramid generation data duplication warning to in-place import'
  # PR 765 hflynn 'Making API doc links point at release version'
  # PR 764 hflynn 'Rephrasing CONTRIBUTING re: branch for PRs'
  # PR 767 rleigh-dundee 'ant: Default all properties and handle empty vars in conf.py'
  # PR 762 rleigh-dundee 'Delegate all Makefile targets to ant'
  # PR 757 hflynn 'ticket 10030 fix - contributing file for docs repo'
  # PR 749 hflynn 'Adding API doc links to OMERO docs front page'

Generated by OMERO-5.0-latest-submods#394 (http://ci.openmicroscopy.org/job/OMERO-5.0-latest-submods/394/)
Use params for event log query (See #12279)

The memory dump from the demo server had over 800MB tied up
in `char[]` all belonging to the `Launcher$AppClassLoader`.
Nearly all of them (>400K instances) were of the form:

  `select el from EventLog el where el.id > SOMEID`

That change is from roughly 2009 yet I've never seen
precisely this issue. Perhaps the recent move of the
`flush()` invocation was leaving more instances dangling.
In any event, this should collapse all 400K instances
down to one.
Reduce query string generation

Rather than generate a new query string on every
loop, a string is now only created when the `excludes`
argument is changed, plus one time on first usage if
no `excludes` value was set.
merge dev_5_0 -D org: PR 2365 (Shared rendering settings)
merge dev_5_0 -D org: PR 2410 (Update dev_5_0 submodules)
merge dev_5_0 -D org: PR 2464 (Support for using other keys for "show" functionality)
merge dev_5_0 -D org: PR 2479 (Parsing of `--debug` on import)
merge dev_5_0 -D org: PR 2487 (Maven/ant improvements (rebased onto dev_5_0))
merge dev_5_0 -D org: PR 2501 (Update permission downgrade message)
merge dev_5_0 -D org: PR 2503 (12176 attach fsfiles)
merge dev_5_0 -D org: PR 2504 (NPE when loading tiles)
merge dev_5_0 -D org: PR 2509 (Tiles py fix)
merge dev_5_0 -D org: PR 2511 (EventLog Query (trac-12279))
merge dev_5_0 -D org

Repository: openmicroscopy/openmicroscopy
Excluded PRs:
  # PR 2505 dpwrussell 'Move webadmin navigation to base template (rebased onto dev_5_0)' (label: exclude)
  # PR 2437 joshmoore 'Docker-based Processor' (label: exclude)
  # PR 2242 joshmoore 'Use mklink under Windows' (label: exclude)
  # PR 2108 rleigh-dundee 'release-src includes bioformats version metadata' (label: exclude)
  # PR 2228 jburel 'Connection scifio' (label: exclude)
Already up-to-date.

Merged PRs:
  # PR 2365 joshmoore 'Shared rendering settings'
  # PR 2410 snoopycrimecop 'Update dev_5_0 submodules'
  # PR 2464 chris-allan 'Support for using other keys for "show" functionality'
  # PR 2479 joshmoore 'Parsing of `--debug` on import'
  # PR 2487 joshmoore 'Maven/ant improvements (rebased onto dev_5_0)'
  # PR 2501 dominikl 'Update permission downgrade message'
  # PR 2503 joshmoore '12176 attach fsfiles'
  # PR 2504 dominikl 'NPE when loading tiles'
  # PR 2509 joshmoore 'Tiles py fix'
  # PR 2511 joshmoore 'EventLog Query (trac-12279)'

Repository: openmicroscopy/bioformats
Already up-to-date.

Merged PRs:
  # PR 1112 joshmoore 'LogbackTools: silence ClassCastException traces'
  # PR 1113 sbesson 'CI logging improvements'

Repository: ome/scripts
Already up-to-date.

Repository: openmicroscopy/ome-documentation
Already up-to-date.

Merged PRs:
  # PR 779 aleksandra-tarkowska 'Webstart template'
  # PR 781 aleksandra-tarkowska 'ldap over ssl instruction improvement'

Generated by OMERO-5.0-merge-daily#673 (http://ci.openmicroscopy.org/job/OMERO-5.0-merge-daily/673/)