new branch smc2evidence; fixed the evidence estimate; outputs it at every time step
added logevidence vector in SMC2 output
Removed a couple of extra semicolons after #endifs.
Fixed Kalman filter not outputting parameters.
Merged netcdf_c_interface branch into master.
Merge pull request #1 from sbfnk/master

Small fix to previous bug fix
Merged smc2evidence branch into master, with some additional
improvements to numerics.
Removed wrappers around NetCDF deflate functions, seem not to be supported in NetCDF 4.0.1.
Added explicit handling of define mode to support NetCDF 4.0.1. Added
NetCDF error messages to previously bare status checks with no error
message.
Reverted size_t usage in SparseInputNetCDFBuffer to long, as some code
still relies on some of these arguments being negative to represent
undefined.
Added error checking to define mode calls. Removed nc_redef() when
already in define mode, as apparently this causes errors.
Updated NetCDF requirement from version 4.0.1 to version 4.1 or later.
Fixed compile error around missing #include "thrust/copy.h" when using
Thrust 1.7.
Fixes for CUDA 5.5 and MAGMA 1.4 support.
Merge branch 'master' of https://github.com/libbi/LibBi
Time variables not associated with a model variable in an input file are
now ignored in time schedule.
Fixed segfaulting due to trying to write device buffers to files in new
NetCDF implementation. Fixed length of incremental evidences vector in
SMC^2.
Added --enable-openmp/--disable-openmp command-line option. Enabled by
default.
Fixed scaling of locally adapted proposal in SMC2.
Fixed ParticleMCMCNetCDFBuffer writing log-prior values to wrong
variable.