added gnuplot to the default configuration
added megablast to the default configuration
create/check configuration file at the very beginning
fastq_match.c added to sort and match the paired-end reads by qname
safe_hts_open added to common.h and common.c, processbam cleanup
minor constant size change in fastq_match.c
Created library_properties struct, altered bam_info struct. New functions parse the BAM header for library count/names. More refactoring done.
multi-lib support for processbam added, need to change fastq processing
minor fix
minor fix
changed create_fastq and added create_fastq_library for multi-sample multi-lib support
multiple BAM input file parameter support added
minor fix
multibam parameter fixes
exit codes
exit codes
fastq sorting/matching added to main program flow in tardis.c. BAM/FASTQ refactoring done. More cleanup & minor fixes introduced
bugs fixed. now ready for remapping with mrfast