Modified MakeAnimation in order to specify Model and Year as command line args
added Threshold_Day_Logistic model to RunJAGS
modified dates in SS functions to use training.end.data from globals so that it's possible to use a smaller subset of data for training, and thus a larger set for validation
for Forecast functions, added Threshold_Day_Logistic model, ability to specify starting year as arg to create, and call to ForecastThreshold function, which calculates the probability of crossing a specific quantile threshold as a function of day of year (defaults to 50% leaf state)
added some functions ploting threshold probabilities to the end of Operations.R
added index.php in order to start setting up web display for forecast