Merge pull request #3 from PhilipsIII/master

Changed all function names and commented the functions that do not currently meet a clear purpose for our simulations.
Clean up of Zhu's initial files

This is mostly a clean up of Zhu's files so that the process of reading
through the files is a little easier.

I think the current one level repository is too big, so I will try to break
it up into different folders next commit.

This version does not yet compile due to the lack of a NNST or NNPT.
Created folders for all files

Made the repository look like a repository. Took way too much time.
New files dividing the Wire serialization

All these files represent the changes made to divide the wire serialization.
The resulting files are a little easier to understand.
Include changes for header helper with new folders
Final changes to files for folder changes.

Had to delete extensions/nnnSIM/model/wire/nnnsim/nnnsim.cc because I divided
into the wire/nnnsim/ folders. All the other changes are for the includes in
the files.

Yey
New headers for nnn-face.cc

In the last commit, I forgot to update the headers for nnn-face.cc
Moved nnn-packets to model subdirectory

Also updated the includes for the new directory location.
Added nnn-nnnsim-wire.h to summarize headers in Wire
Added nnn-naming to summarize naming directory headers
Main header for nnnSIM

This should be the main file to add all headers. Will go through further
changes in the following hours.
Added license information to all wire files

Also added a header to make the wire header files a little easier to manipulate.
More changes to the headers for new directory structure
Fixing changes to headers for helpers and forwarding strategies
Finished header issues

This does not still fix compile issues as stack helper, forward strategy
and l3-protocol are not complete classes.
Began L3 Protocol writing

Started fixing a huge error I had made when declaring the namespaces.
Remaining L3Protocol with wrong names

I think these are the final names I got wrong.
NNN Face fixed to current code status

The NNN face files have been modified to accept all the defined packets.
Forwarding to create the Forwarding strategies

All these files have been modified to get closer to having a functional NNN
stack.

I still haven't decided how I will implement the NNPT or NNST, but now I know
that I need the auxiliary functions that I have been fixing in these files.
NNPT and NNST table files

I think these will be the final header files that I will have to add, for now.

nnn-face-container.{h,cc} is a finished copy and is ready for use.