Fixes incorrect function description and adds note
Further preps visualizer.js for recieving future qubit data

- Adds a placeholder for the array that will contain padding
values (the values that will control what percent of entanglement
is not available to each qubit)
Improves entanglement arc size (imo)
Corrects some comments
Whitespace
Gets rid of previously helpful comments

- The stuff that helped organize the update functions
Gets rid of more old comments and clarifies test procedure
Adjusts comments
Merge pull request #19 from knod/layoutoverride

Layoutoverride