MAINT: more specific name for compute_index.py
Merge branch 'master' of github.com:qiime/qiime into index_name_change
Renaming teh things
Merge branch 'index_name_change' of github.com:wasade/qiime into index_name_change
MAINT: updated names for consistency and to fix script usage test failure
TST: removed test output files
MAINT: fixed inconsistency in option naming
MAINT: fixed error in recent commit
DOC: clarified script documentation
DOC: more doc clarification
Merge pull request #1803 from gregcaporaso/index_name_change

some fixes to compute_taxonomy_ratio.py to get tests passing and clarify docs