Use new version of Device.configureLocalApp
Merge pull request #2018 from jlipps/master

add enablePerformanceLogging cap for chrome/android hybrid
Merge pull request #2019 from imurchie/isaac-iosconfig

Use new version of Device.configureLocalApp
add --command-timeout server arg
so the server can set its own default timeout.
also, clean up some of the command timeout logic