creating a vsearch based pyrad"
lib directory w/ vsearch and muscle included
updated vsearch to 1.03
2->3 compatible. Paired splitter changed to n. Warning if no gids for treemix & migrate output
threading for vsearch vs usearch detection. threading for alignments, but commented out while testing
splitter fixed and compatible from v3 back to early v2
splitter fixed and compatible v3-v2
 new params file options
detects pear output files for merge filtered reads
improved random sampling
pair splitter to n. backwards compatible
pair splitter to n. backwards compatible
locus numbers start at 1 instead of 0
works with pear filtered reads. lowdepth setting now works down to 1.
cleaned up code. Allow space or tab in barcodes file
removed lib/ dir
cleanup
cleanup
totalvar calc fix. RAD fix
trimmed error message