Split IDs

I have a temporary fix for the ID running over problem (issue #3). Chris thinks we can place the synonyms and IDs in the ontology tab because it shouldn't be very prominent anyways.
Merge remote-tracking branch 'skim/sarah_branch' into portal-candidate-20140110

Merging in Sarah Kim's work with monarch-app master as candidate for
portal
changed .gitignore to ignore all ringo files
refactoring some of the changes associated with cleaning up Sarah's code
Merge remote-tracking branch 'origin' into portal-candidate-20140110

merging updates from January 10-13...
revised js loading and add search.js
Merge branch 'portal-candidate-20140110' of https://github.com/monarch-initiative/monarch-app into portal-candidate-20140110
Cleaned up css files

I replaced many of the css files with (1) monarch-common.css, which is used by all monarch pages, and (2) monarch-main.css, which is used by all main pages (disease, phenotype, model, anatomy).

Please use this for the January release because Harry's merge (all into monarch-common.css) broke some things.
Finished making disease & phenotype pages responsive

The disease and phenotype pages are not yet fully responsive (not yet for mobile), but they now display more cleanly on differently sized displays.
Navbar changes

- Separated tour into tour and glossary
- Added tour and glossary to navbar drop down menus under Contact and Documentation (respectively)
Small changes to Glossary & Tour pages
Added Publications page
Removed some TODO notes & change name of Tour button
Removed more TODO notes
Removed more comments
Small change to word
added options to pull just the LD context file
test
Removed recent searches feature from navlist
Made overview smaller