Update main.cpp
Update main.cpp
merge stuff
formatting
GPL3
rename
update run
renamed files
add some build files
Makefile
Changes
Moved locatio of config.xml
build scripts

added scripts that allow me to build and run remotely1
OSX

Ported program to OSX.  Must address bug with creating folders.
Reenabled OMP features
Removed reference to depricated function.

Changed argument to std::vector and used an overloaded function
that already existed.
bisectionMethod

Created a source file for my bisection method class.  This will be my
personal class to implement the bisection method.  I plan on using
boost as the backend of the calculations but this will be my public
interface.
Updated project file

Included reference to bisection method class.
Removed deprecated function

removed duplication of phase99
removed command line argument