deleted files from SDP project. Commented/polished SimulFXns & RakMK
Removed unnecessary code, polished, commented. Added EHM.late=0 simulation to HOllModFits
changed output file names, some more polishing/streamlining to scripts
renamed a bunch of files. Hopefully git's still tracking them well
changed copula workflow to only deal with Uganda DHS. Removed other DHS data sets from data files.
removed plot functions
removed univariate CI plot from revisedCIs
Create README.md
removed setwd() from all files. Deleted moddiag scripts (unfinished)
Merge branch 'AcuteRetroSimMS' of github.com:sbellan61/AcuteRetroSim into AcuteRetroSimMS