added draw_histogram using matplotlib
option to introduce the number of threads for mapping added to
trim_chimeras
Merge branch 'master' of ssh://gitolite@proxybioinf.comav.upv.es:2203/seq_crumbs
unnecesary line removed
aligned_read_to_seqitem allows now selecting a part of the seq
trim_chimeric_region structure changed and duplitated code removed
trim_chimeric_regions trims 3' end also when 5' end is not mapped
bug in get_qstart fixed
change bowtie2 function interface
changes in trim_chimeras undone: only trim 3' end
printing summary statistis removed from filter_chimeras
error fixed in _get_longest_5end_aligned_read: it did not store the
biggest length before
option added to draw mate pairs distance distribution in trim_chimeras
and filter_chimeras
test for trim_chimeras bin added
tests for new option draw mate pair distance distribution added
filter_chimeras takes now fpaths instead of fhands as input
bamfile option in trim_chimeras changed
draw_mp_distance distribution bin implemented and proper tests created
'directory' name changed to 'tempdir'
unnecesary function removed
updated doc
Merge branch 'master' of ssh://pb:2203/seq_crumbs