Merge pull request #52 from cboursnell/master

Inline C version of linguistic complexity metric
add shiny logo
Merge branch 'master' of github.com:Blahah/transrate
logo in README
formatting
use new CRB-Blast run API
rearrange
added rake task for contig
fixed for issue #59
changed kmer counter to a switch statement to better handle ambiguous bases #59
add tests to check for ambiguous bases #59