Use iput -k to refresh the checksum
Added a --force command line flag to allow published data to be re-sent
Updated the online help
Added support for capturing the donor_id from the warehouse and adding
it as sample_donor_id metadata in iRODS
Make magnitude and xydiff optional; fixes bug with --nosim workflow option
Make MAF-HET metrics optional in collation
Merge pull request #260 from iainrb/devel

Make intensity and MAF/HET metrics optional in collation
Merge pull request #261 from keithj/devel

Added support for capturing the donor_id from the warehouse
Added an Infinium database query to find finished samples by date.

Modified the query which finds samples in a project, plus their data
files, to distinguish re-scans by their date and eliminate duplicate
records being handed to the analysis pipeline. (The pipeline rejects
them.)

Refactored the Infinium database queries to remove some duplication.
The response check was too strict; valid responses are a HashRef or an
ArrayRef, in the event of listing a collection.
Refactored --force flag handling to add elimination of duplicate plate
names.
Ensure that the resultset count is set to 0 in the event of no data.

Also some formatting noise.
Merge pull request #262 from keithj/devel

Changes to the Infinium database queries to introduce date selection
Sample list data for unit tests.
Merge pull request #263 from keithj/devel

Sample list data for unit tests
Updated ScriptsTest to ensure that results for the test dataset are returned.

Made the --qc-platform CLI parameter for ready_infinium.pl optional.

Updated Fluidigm QC data fetching based on experience with some real data.
Merge pull request #264 from keithj/devel

Final pre-release changes
Updated manifest
Merge branch 'release-1.5.8'