SortMeRNA updates and latest tables

Bit of a big PR...
Nah, that should be stable

On Wed, Dec 3, 2014 at 10:55 AM, Yoshiki Vázquez Baeza <
notifications@github.com> wrote:

> In americangut/make_phyla_plots.py:
>
> > @@ -67,7 +68,8 @@ def load_category_files(category_files):
> >
> >      for (category, category_file) in category_files.iteritems():
> >          if isfile(category_file):
> > -            cat_table = parse_biom_table(open(category_file, 'U'))
> > +            with biom_open(category_file, 'U') as fp:
>
> I guess that if we don't forsee these functions disappearing in the
> future, then it's fine to leave as is. Up to you.
> … <#14a114b3f511ef0b_>
> On (Dec-03-14| 8:23), Daniel McDonald wrote: > @@ -67,7 +68,8 @@ def
> load_category_files(category_files): > > for (category, category_file) in
> category_files.iteritems(): > if isfile(category_file): > - cat_table =
> parse_biom_table(open(category_file, 'U')) > + with
> biom_open(category_file, 'U') as fp: Probably... but this works and is
> functionally equiv. Can change if you'd like tho --- Reply to this email
> directly or view it on GitHub:
> https://github.com/biocore/American-Gut/pull/116/files#r21242798
>
> —
> Reply to this email directly or view it on GitHub
> <https://github.com/biocore/American-Gut/pull/116/files#r21250374>.
>