Support additional genomes: TAIR10 and WBcel235
Structural variation improvements: Delly downsampling to 50M reads, limit maximum callsize into ensemble/BED calls for validation. Handle CNV based matches
Use index files for finding alignment genomes instead of potentially non-existant 'base' file. Enables finding on non-shared filesystems where locations change
Merge branch 'master' of github.com:chapmanb/bcbio-nextgen
Work towards enabling non-shared filesystems: generate output files for cominbing on the fly, pre-calculate callable region counts, clean up postprocess_alignment output to be consistent
Change installation defaults: no longer use sudo by default, and require explicit specification of genomes and aligners to install. Enables more minimal isolated installations
v0.8.0 release