Create vcfGTableInd.pl

This script takes in VCF input, uses CHR, POS to index each variant; takes cols 9..-1 and parses genotype; if 0/0, 0/1, 1/1 outputs 0, 1, 2 respectively. For non-Perl people use is:
perl /path/to/scripts/vcfGTableInd.pl <my.vcf> <my.vcf.GTableInd.tab>