Change pctSimilarity to percentSimilarity
bug 18909

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 130671]
Update h5 file primary version to 2.0.0
bug 24731

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 131636]
Migrate cram test data for blasr and pbalign.
bug 24733 	

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 131637]
Revert change 131636 because changing version from 1.3.1.SF to 2.0.0 may 
   break some scripts in pbpy.
bug 24731

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 131640]
   Bug 24718. Change encoding of N from 0 to 15/240 to be consistent with cmp.h5 spec.

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 131739]
   Bug 24499. Add a new method to HDFBasReader that just reads basecalls and QVs rather than everything. Use it in pls2fasta.

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 132369]
Update blasr help description. 
Update error messge when input h5 file has no /PulseData group.
bug 24230	
prop:S2.2

[git-p4: depot-paths = "//depot/software/assembly/cpp/": change = 132870]