Added Scalar variables to output of TopResidualDebugOutput. Now they are included in the list if e.g. "[Debug] show_top_residuals=5 []" is given in the input file. This fixes #4402.
Added tests for inclusion of scalar variables into TopResidualDebugOutput
Initialize variables
(closes #4410)
Added two new Parsed material example problems for #4406
Merge pull request #4411 from aeslaughter/input-params-4410

Initialize variables
Merge pull request #4412 from tonkmr/new_pf_examples_4406

Added two new Parsed material example problems for #4406
Skip tests for now (refs #3431 and #4407)
Merge pull request #4417 from aeslaughter/csv-broken

Skip tests for now
Merge pull request #4401 from dasmy/TopResidualOutput_include_ScalarVariables

Include scalar variables in TopResidualDebugOutput
Merge commit '5e6817a770413d1979685906fbd02f30d18c4840'