Merge pull request #88 from mariogiov/master

Frantic last-minute coding, WIP / possibly inconsistent /
Merge pull request #91 from mariogiov/devel

A bunch of coding and restructuring I did on an airplane
minor changes
Merge branch 'NGI_mario_devel' into devel
Pull libprep from Uppsala samplsheet (needs testing)
minor bug fixes plus soflinking fastq files in place of rsyincing them
Pull Uppsala library prep names from SampleSheet.csv
ImportError Bugfix
If local process tracking database is locked, wait and try again 3 times
changed bp start threshold to 28.9
resolving conflicts
Bugfix
Bugfix / typo
Bugfix / error msg
typo
Merge ngi_devel
Replace pseudocode I forgot was pseudocode with realcode
Merge pull request #93 from mariogiov/devel

Uppsala libprep from Samplesheet.csv and handle db locking
fixing conflicts
Bugfix: set sample status in Charon to COMPUTATION_FAILED instead of FAILED