Bugfix: get fastq files from object (not filesystem)
Merge branch 'devel' of https://github.com/mariogiov/ngi_pipeline into devel
Merge branch 'devel' of https://github.com/mariogiov/ngi_pipeline into devel
Merge branch 'devel' of https://github.com/mariogiov/ngi_pipeline into devel
Merge branch 'devel' of https://github.com/NationalGenomicsInfrastructure/ngi_pipeline into devel
Merge pull request #133 from mariogiov/devel

The important bit is the Unknown library prep in flowcell.py
Merge pull request #134 from mariogiov/devel

Don't copy symlinks as symlinks
Update api documentation
Merge pull request #135 from guillermo-carrasco/devel

Update api documentation
Merge pull request #136 from mariogiov/devel

Skip libreps that are FAILED, rework scratch directory tree, update seqruns with sample status
Merge branch 'devel' of https://github.com/NationalGenomicsInfrastructure/ngi_pipeline into devel
Remove section about run_tracker.py
And remove also the tests!
Merge pull request #137 from mariogiov/devel

Robust-ify a bit
Ignore more files. Correct API call
Catch every fc name
Create generic NGIHandler. Fixes #128
Correctly pass parameters. Fixes #129
Correct parameters... again
Create abspath for flowcell