Fix code for receiving structure target on command line
Screw it, retabulate everything
Switch algorithms to C++
Switch to std::vector for all minimizations in algorithms.cc
Switch energy to C++
Retabulate energy
Trim superfluous code and includes from repo
Fix one last old-fashioned MIN in algorithms
Switch all inf values to float INFINITY
Switch all math from double to float
Properly load a,b,c values into memory
Print results from RNAscorer script
Set correct default values for a,b,c
Update SWIG-generated C++ files
Switch all values to long double
Add test sequences and structures
Break out main logic of iB4erunner into method
Set up iB4erunner to handle files in directories
Add error for missing sequence file
Move test data into test_data subdirectory