Merge pull request #202 from firedrakeproject/public_coordinates

Make the coordinate field a public property of the Mesh.
Simplify test_identity
Clean up setup.py
io: Initialise warnings to list if passed None
Merge pull request #200 from firedrakeproject/fix/vtu-io

Fix output to bare vtu files.
Ensure PETSc is always imported from firedrake.petsc
Purge use of firedrake prefix in tests

We do from firedrake import * everywhere, which doesn't give us
firedrake.Foo.
Plex: fix mesh creation from cell lists in parallel

We should only pass in the topology data on rank zero, and then
distribute, rather than replicating the mesh on all ranks.
Raise error for periodic interval in parallel

Creation of mesh and replacement of coordinates only works in serial for
now.
Add some simple-minded parallel mesh tests

Compute the integral of one over various different meshes in parallel.
Remove ability to spawn gmsh process

Since we rely on gmsh for much less mesh generation now, and spawning a
gmsh process was so flaky, only support building meshes from .geo files
if we have gmshpy installed.

This additionally removes references to gmsh2triangle and fldecomp.
Skip unit circle tests if gmshpy not available
Make circle mesh coarser for speed of testing
Merge pull request #203 from firedrakeproject/fix/plex-distribute

Fix parallel mesh generation when using createFromCellList.
Additionally, remove possibility to generate meshes by spawning gmsh,
which has always been flaky.  You now get an error if trying to invoke
gmsh when gmshpy is not installed.
Ignore some more flake8 errors
Give sensible firedrake error for par_loop MapValueErrors

If we get a map mismatch error in par_loop argument checking during
assemble, the most likely explanation is that the measure does not match
one or more of the form arguments or coefficients.  So report that,
rather than some argument check in the guts of PyOP2.
Merge pull request #118 from firedrakeproject/fix/measure_error
Gmsh: Adding boundary support to Gmsh interface
Gmsh: Switching cohomology test back to Gmsh
Gmsh: Re-enabling UnitCircle tests