First commit to manuscript
Lots of writing done

Updates to EPIRICE portion.

Updates to RICEPEST formulas.

New citations for Python and SEIR model.

Further elaboration on what linking RICEPEST with EPIRICE offers, in
introduction.
Clarifications and enhancements

Clarifications in text.

New reference for climate change in Tanzania (Africa) as related to
other major grain crops
Added Thornton 2009 Reference

Need to read and add to discussion/conclusion.
Enhancements and additional writing

Added Rowhani reference to rice yield decrease

Fixed AUDPC table
Updates and added new figure

Included estimates at 14DACE for initialising RICEPEST, in text.

New SVG flowchart illustrating the model simulations, time slices and
outputs
Updates to Simulation Tree figure
Added Confi's current address
Updated PS added new flowchart, removed old

Updated PS based on Willocquet et al 2004.

Deleted Inkscape SVG flowchart, started .odg chart instead for
simulation tree showing Scenario/year/disease flow
Updated Simulation Tree Flowchart
Deleted auxiliary file
New yield data

New yield data from RICEPEST using PS3 from Willocquet et al 2004
Added Teixeria et al. to bib

yield reductions due to climate change
New figures for yield losses
New figures
Deleted R code for merging with main
Merge branch 'Manuscript'