initial commit
initial commit of mince
Commit of mince source --- currently very researchy
Slight refactoring and argument checking
Added Canonicalize and MergePairs tools and bugfix to decoder
Switched build system to CMake
Updated mergepairs to handle reads with same orientation
Made minor changes to allow building with clang on OSX
Fixed problem with building TBB on OSX using clang
Updated encoder --- decoder not at parity yet
merged