Fix jar names

The bio-foramts uber-jar is now renamed and included correctly as
"bioformats_package".

The scifio-itk-bridge jar is shortened to just "scifio-itk-bridge",
leaving off the version information to make the include statement less
fragile for future version updates.
Remove loci_tools references in javadoc

The documentation has been updated to replace loci_tools references with
"bioformats_package".