- Moved original classes, interfaces, and resources to v1 package.
- Added the test workflow to v2
- Catch NullPointer when trying to load workflow to allow better logging.
Merge pull request #4 from djvanenckevort/master

Added the test workflow to v2
- Replaced usages of the HttpsURLConnection class by usages of the HttpURLConnection class.
- Added second workflow with specific handling of input and output.
Merge remote-tracking branch 'origin/master'
Added Javadocs.
- GalaxyWorkflowEngine: added fixed expected output length and other hardcoded stuff for test workflow 2, moved ensureHasWorkflow & readWorkflowJson methods to the GalaxyWorkflow class, and added testHistoryStatus method to test getting file/workflow status (currently commented out).
- GalaxyWorkflow: added ensureWorkflowIsOnServer and readWorkflowJson methods (this code used to be in the GalaxyWorkflowEngine class).
- Renamed AbstractWorkflow to DefaultWorkflow and added Javadocs.
Added TestWorkflowScatterplot.ga and TestWorkflowScatterplotCorrelation.ga.
Merged change from Commit 3d7481ab7d993a7192578e731155806ed7c22895 by Youri.
After discussing changes from commit 2447105eefec561b34481310718d08f43767208f by Youri, we (Youri and Freek) decided to rename the Configuration class to GalaxyConfiguration and to postpone renaming Workflow to WorkflowTemplate/WorkflowJob/etc.
Temporary: saving the result from the scatterplot workflow as a pdf file completed the TraIT hackathon!
Added package Javadocs.
Fixed several Checkstyle issues
- Added hidden constructors.
- Reordered fields.
- Added/changed Javadocs.
- Created variables for repeating strings and a magic number.
Let git ignore the IntelliJ IDEA module file (WorkflowRunner.iml)
Added central maven plugin repository and explicit findbugs maven plugin
Completed the HistoryUtilsTest.testDownloadDataset unit test
Update README.md

Added goal to make reusable bridge building components
Clarified the primary goal
Added command to link fork to master repository
Added JaCoCo for code coverage
- pom.xml: added the JaCoCo Maven plugin to determine the code coverage of the unit tests.
Also a few other changes:
- Copied HistoryUtilsTest and WorkflowUtilsTest classes from v1 to v2.galaxy package.
- Created first version of the GalaxyWorkflowEngineTest class (to be completed).
- Added TestWorkflow.ga for the GalaxyWorkflowEngineTest.