updating to include haxe_doc values, changing the type of delimeter for the --flag to be -flag, making it run as a haxelib rather than as a standalone tool, and running from the correct path, so the scribe.json and other data can be project specific, changing the lime project to be the project file path, instead of folder (this allows usage for any project etc). bumping version to 0.9.0 before finalising the api and usage for 1.0.0 release on haxelib.