unified [===[]] style glyphsets to use a common (highlighting) set of code
Blast hit track for contigview bottom
Added another highlighting mechanism - outbox - an outline boxcvs diff GlyphSet/Videogram.pm
WHITESPACE
Updated to compress space when drawing multiple columns
Made to use chr name not ID
Added href code to transcript.pm
Changed blast.pm to use cached hits file
puts links on backwards
Changed colour of "var" bands to a light grey from a very light grey
Only draws black box around bands if falling off either end
modified GCplot to use a line drawn representation of %GC - max and min set to 25 and 50%
removed error reporting from glyph set
Tweaked code to better handle rounding errors in rounding end code
Fixed bug in gc-plot code which didn't display GC line after a gap
Added strandedness to blast hit plots
Removed XX: STDERR
Changes to glyphsets
Added code to sort the order of arrows - but keep the order of objects supplied - don't look it ain't pretty
Added extra display information in cached file to improve the information on the hits - and also improved the "do I display it code"