DataPreparationJob pipeline refactorings + similarity checks + param changes combinations
Merge pull request #28 from Feodorov/task/14070

DataPreparationJob pipeline refactoring + similarity checks + param changes combinations
task/16695 - yprimers creates olig.size > maxOligSize
TASK 16622
Global Alignment, Local Alignment, Semiglobal Alignment
with Affine Gap
with tests
Small refactoring of code
TASK 16622
Alignment with affine gap
with change order check direction in traceback Alignment
with tests from Rosalind and ig-toolkit
with comments
g(k) = a + (k - 1)b