[COOK-4474] - Bump apt and yum versions in Berksfile, Lock to build-essentials 1.4

Signed-off-by: Sean OMeara <someara@opscode.com>
[COOK-4468] - Set NOKOGIRI_USE_SYSTEM_LIBRARIES env variable

Signed-off-by: Sean OMeara <someara@opscode.com>