Cleanup unused vars
Don't always upcase acronyms
Jenkins: unit tests passed with bundle update, updating Gemfile.lock
Jenkins: unit tests passed with bundle update, updating Gemfile.lock
Remove classes not found in the search index from annotator results when populated data is requested
Jenkins: unit tests passed with bundle update, updating Gemfile.lock
NCBO-603 #comment Enabled new search parameter 'subtree_root' ('subtree_id' still works).
NCBO-603 #comment Enabled new search parameter 'include_obsolete' ('obsolete' still works).
NCBO-603 #comment Enabled new annotator parameter 'include_synonyms' ('with_synonyms' still works).
added documentation for longest_only parameter
Jenkins: unit tests passed with bundle update, updating Gemfile.lock
Jenkins: unit tests passed with bundle update, updating Gemfile.lock
Look for `ontology` and not `acronym`
New non-dynamic branch dependency
Jenkins: unit tests passed with bundle update, updating Gemfile.lock
Jenkins: unit tests passed with bundle update, updating Gemfile.lock
Jenkins: unit tests passed with bundle update, updating Gemfile.lock
Jenkins: unit tests passed with bundle update, updating Gemfile.lock
Jenkins: unit tests passed with bundle update, updating Gemfile.lock
Jenkins: unit tests passed with bundle update, updating Gemfile.lock