- import-and-align.bsh: small settings change
- scale-and-crop-export: scale only
- submit-align-overlapping-projects-job: unused
- submit-align-overlapping-projects-pair-jobs: removed old commented qsub calls and debug outputs
- submit-align-overlapping-projects-pair-jobs-if-not-exists: Orchestra-specific LSF addition -R"select[groups]"
- submit-apply-aligned-overlapping-projects-job:
- submit-export-jobs:
- submit-jobs:
- submit-test-projects-job:
  Orchestra-specific LSF addition -R"select[groups]"
  removed old commented qsub calls and debug outputs