cufflinks: Fix url
cufflinks: Fix dependency

Closes #1492.

Signed-off-by: Shaun Jackman <sjackman@gmail.com>
muscle 3.8.31: Add doi and tag

Closes #1563.

Signed-off-by: Shaun Jackman <sjackman@gmail.com>
muscle: add 3.8.31 bottle.
mummer 3.23: Change single quotes to double quotes

Closes #1565.

Signed-off-by: Shaun Jackman <sjackman@gmail.com>
mummer: add 3.23 bottle.
corset 1.04

This should resolve the compilation bugs reported on
https://groups.google.com/forum/#!topic/corset-project/6KZgWR1uZlU

Closes #1568.

Signed-off-by: Shaun Jackman <sjackman@gmail.com>
corset: update 1.04 bottle.
parsnp 1.0: New formula

Rapid bacterial core genome alignment and SNP detection