added initial code from msmbuilder2. I also split the file up because there are a lot of functions in there
updated path finding code and removed a lot of old code
simplified fluxes.py
updated mfpt code. I'd like to cite someone for the limiting matrix formalism
going to hold off on hubs.py until we figure out whether we even want these functions
added imports in tpt.__init__. We should decide how we want people to interact with this stuff.
translated hubs.py and cleaned things up a bit. I ended up putting the conditional committor calculation in committors.py
got the imports to work
rework init so that you access the functions via tpt.<function name>
renamed tpt/<filenames> so that they didn't conflict with functions. This way if someone actually wants to import the module they still can.
accidentally deleted everything... woops.
added simple tests for tpt functions
commented out print statements in tpt test
fixed xrange issue for python 3
added mfpt calculating. there may(?) have been a bug in msmbuilder's implementation
Merge branch 'master' of github.com:schwancr/mixtape into tpt
Merge branch 'tpt' of github.com:schwancr/mixtape into tpt
Make TPT docs
fixes from @schwancr
Merge pull request #2 from rmcgibbo/schwancr-tpt2

Schwancr tpt2