Trackster: refine label track position calculation.
Increase reference sequence size to data provider to support reference-based compression of spliced reads.
Trackster: fix location of gap line and read-pair connector line.
Close next-stable for upcoming release_2014.08.11
Updated tag latest_2014.06.02 for changeset 7a4d321c0e38
Merge next-stable branch for release_2014.08.11
Added tag release_2014.08.11 for changeset ca45b78adb41
Added tag latest_2014.08.11 for changeset 52b5cc75a175
install_repository_manager do not need trans.app anymore.
install_repository_manager do not need trans.app anymore.
First argument to __install_repositories is the Tool Shed URL (tool_shed_url)
First argument to __install_repositories is the Tool Shed URL (tool_shed_url)
initiate_repository_installation was not updated in the recent code restructuring efforts
initiate_repository_installation was not updated in the recent code restructuring efforts
Fix multi-page tool help parsing.
Patch thanks to Hans-Philipp Brachvogel.
Merged in BjoernGruening/galaxy-central-4 (pull request #454)

Fixes for recent Tool Shed code cleanups
History & collections: client-side file and class renaming: - li: readonly list item view, - li-edit: editable list item view, - primary identity first (eg. hda-*), - moved hda/hdca into history directory; Fix bug for dataset URLs
Updated tag latest_2014.08.11 for changeset 7e4d21621ce1
History panel: clean up and documentation
Created new branch tool_list_fix