Minimal description in README
Calculating the transitions in a pure migration model...
Code cleanup
Refactoring to state space code
Added isolation system to I model.
A bit more refactoring
Loose the coupling between the CTMC and the state space
Both Single and Isolation state spaces
Calculating projection matrix for the speciation event in the isolation model
Computing isolation model transition probabilities
Merge branch 'feature/isolation-model' into develop
Caching CTMC probability matrices
removed FIXMEs
A bit of code cleanup
Calculating coalescence times for emissions
HMM code
Ignoring...
Merge branch 'feature/emission_probabilities' into develop
Calculating equiprobable break points for an isolation model
Class wrapping HMM construction for the isolation model