Added infos about the possibility to use GRanges/GRangesList object in doc of parseRegions function

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
Changed the name of the package to metagene

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
DESCRIPTION: solved a bug I introduced by changing the DESCRIPTION file

Signed-off-by: Charles Joly Beauparlant <charles.joly-beauparlant@crchul.ulaval.ca>
R/plot.R: modified the binMatrix function that did not have the expected behavior

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
rename vignettes/MetaMineR.Rmd to vignettes/metagene.Rmd

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
metagene.Rmd was no longer in correct repository

Signed-off-by: Charles Joly Beauparlant <Charles.Joly-Beauparlant@crchul.ulaval.ca>
Minor modifications to vignette document