Don't you need to include the analysis ID in the path, otherwise brassInput will fail lookin for the .bas file
Working on cleaning up the ini file, remove unused items
Merge branch 'multi_tumour' of github.com:ICGC-TCGA-PanCancer/SeqWare-CGP-SomaticCore into multi_tumour

Conflicts:
	workflow/config/CgpCnIndelSnvStrWorkflow.ini