git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11745 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11746 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11749 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11750 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11751 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11752 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11753 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11754 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11756 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11757 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11758 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11759 f3b2605a-c512-4ea7-a41b-209d697bcdaa
Removed redundant class variables

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11760 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11762 f3b2605a-c512-4ea7-a41b-209d697bcdaa
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@11763 f3b2605a-c512-4ea7-a41b-209d697bcdaa
improve documentation for fix gcmc

You cannot use multiple fix gcmc instances which use a template molecule.
This is now documented and part of the issue already addressed in the code.
Merge remote branch 'lammps-ro/master' into lammps-icms

Resolved Conflicts:
	doc/Manual.html
	doc/Manual.txt
	src/USER-OMP/fix_qeq_comb_omp.cpp
various little cleanups to silence compiler warnings

clarify/simplify some code and initialize variables where needed.
also remove dead code and unused class members
fix bug in single() method of pair style lj/cut/coul/dsf

the energy calculation was using "r" to check for the cutoff instead of rsq.
silence some more compiler warnings